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short oligonucleotide array  (Thermo Fisher)


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    Structured Review

    Thermo Fisher short oligonucleotide array
    Short Oligonucleotide Array, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/short+oligonucleotide+arrays/pmc03198759-34-11-10
    Average 90 stars, based on 1 article reviews
    short oligonucleotide array - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: Genetical Toxicogenomics in Drosophila Identifies Master Modulatory Loci that are Regulated by Developmental Exposure to Lead
    Article Snippet: Identification of potential false positive cis -eQTL One concern with using Affymetrix short oligonucleotide arrays is that a probeset containing 14 perfect match probes could contain one or more probes that has a SNP in either ORE or Russian 2b .

    Article Title: Genetical Toxicogenomics in Drosophila Identifies Master Modulatory Loci that are Regulated by Developmental Exposure to Lead
    Article Snippet: One concern with using Affymetrix short oligonucleotide arrays is that a probeset containing 14 perfect match probes could contain one or more probes that has a SNP in either ORE or Russian 2b .

    Gene Expression:

    Article Title: Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays
    Article Snippet: .. Recently, chip-based methods [ - ] (and references [ - ]) such as Affymetrix gene expression arrays have been used for SNP discovery Affymetrix short oligonucleotide arrays are fabricated with sets of eleven 25-mer probes to interrogate the expression level of a particular mRNA. ..

    Article Title: Hepatic gene expression in morbidly obese women: implications for disease susceptibility.
    Article Snippet: .. Microarray gene expression analysis RNA samples, from 13 MO and 5 MWL subjects, were processed using standard protocols for short oligonucleotide arrays (Affymetrix HG-133A, Santa Clara, CA) as described (21) and outlined in detail in Supplementary Appendix 2 online. ..

    Expressing:

    Article Title: Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays
    Article Snippet: .. Recently, chip-based methods [ - ] (and references [ - ]) such as Affymetrix gene expression arrays have been used for SNP discovery Affymetrix short oligonucleotide arrays are fabricated with sets of eleven 25-mer probes to interrogate the expression level of a particular mRNA. ..

    Article Title: A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
    Article Snippet: .. For instance, on short oligonucleotide arrays (such as those produced by Affymetrix), many reporters are used to measure the expression of the same gene. ..

    Microarray:

    Article Title: Evaluating genome-wide DNA methylation changes in mice by Methylation Specific Digital Karyotyping
    Article Snippet: .. Most commercially available micro-array platforms are developed for restriction enzyme and affinity based assays like the short oligonucleotide arrays (Affymetrix), tiling arrays (NimbleGen) and CpG Island/promoter arrays (Agilent) [ ]. ..

    Article Title: Hepatic gene expression in morbidly obese women: implications for disease susceptibility.
    Article Snippet: .. Microarray gene expression analysis RNA samples, from 13 MO and 5 MWL subjects, were processed using standard protocols for short oligonucleotide arrays (Affymetrix HG-133A, Santa Clara, CA) as described (21) and outlined in detail in Supplementary Appendix 2 online. ..

    Produced:

    Article Title: A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
    Article Snippet: .. For instance, on short oligonucleotide arrays (such as those produced by Affymetrix), many reporters are used to measure the expression of the same gene. ..



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    Image Search Results


    a, b: Theoretical outcomes of probe hybridization . A) Affymetrix short oligonucleotide arrays are fabricated with sets of eleven 25-mer probes to interrogate the expression level of a particular mRNA. Because of the short probe length, a SNP falling in the middle of the probe sequence will result in that probe's failure to hybridize. B) Three potential hybridization scenarios within a single probe set are depicted: 1) mRNA to target probes is not expressed in either breed, 2) mRNA to target probes is equivalent in both breeds or, 3) intensity of probes is expressed in one breed and negligible in the other breed. In this latter case, a probe-by-breed effect is seen with Meishan RNA hybridized to probe 2 of the probe set. The green hash represents the SFP located within a central nucleotide position within the probe.

    Journal: BMC Genomics

    Article Title: Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays

    doi: 10.1186/1471-2164-9-252

    Figure Lengend Snippet: a, b: Theoretical outcomes of probe hybridization . A) Affymetrix short oligonucleotide arrays are fabricated with sets of eleven 25-mer probes to interrogate the expression level of a particular mRNA. Because of the short probe length, a SNP falling in the middle of the probe sequence will result in that probe's failure to hybridize. B) Three potential hybridization scenarios within a single probe set are depicted: 1) mRNA to target probes is not expressed in either breed, 2) mRNA to target probes is equivalent in both breeds or, 3) intensity of probes is expressed in one breed and negligible in the other breed. In this latter case, a probe-by-breed effect is seen with Meishan RNA hybridized to probe 2 of the probe set. The green hash represents the SFP located within a central nucleotide position within the probe.

    Article Snippet: Rostoks et al. [ ] reported an average of 35–40% FDR to detect SFPs using cRNA hybridized to Affymetrix barley gene expression short oligonucleotide arrays.

    Techniques: Hybridization, Expressing, Sequencing

    a, b: Theoretical outcomes of probe hybridization . A) Affymetrix short oligonucleotide arrays are fabricated with sets of eleven 25-mer probes to interrogate the expression level of a particular mRNA. Because of the short probe length, a SNP falling in the middle of the probe sequence will result in that probe's failure to hybridize. B) Three potential hybridization scenarios within a single probe set are depicted: 1) mRNA to target probes is not expressed in either breed, 2) mRNA to target probes is equivalent in both breeds or, 3) intensity of probes is expressed in one breed and negligible in the other breed. In this latter case, a probe-by-breed effect is seen with Meishan RNA hybridized to probe 2 of the probe set. The green hash represents the SFP located within a central nucleotide position within the probe.

    Journal: BMC Genomics

    Article Title: Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays

    doi: 10.1186/1471-2164-9-252

    Figure Lengend Snippet: a, b: Theoretical outcomes of probe hybridization . A) Affymetrix short oligonucleotide arrays are fabricated with sets of eleven 25-mer probes to interrogate the expression level of a particular mRNA. Because of the short probe length, a SNP falling in the middle of the probe sequence will result in that probe's failure to hybridize. B) Three potential hybridization scenarios within a single probe set are depicted: 1) mRNA to target probes is not expressed in either breed, 2) mRNA to target probes is equivalent in both breeds or, 3) intensity of probes is expressed in one breed and negligible in the other breed. In this latter case, a probe-by-breed effect is seen with Meishan RNA hybridized to probe 2 of the probe set. The green hash represents the SFP located within a central nucleotide position within the probe.

    Article Snippet: Recently, chip-based methods [ - ] (and references [ - ]) such as Affymetrix gene expression arrays have been used for SNP discovery Affymetrix short oligonucleotide arrays are fabricated with sets of eleven 25-mer probes to interrogate the expression level of a particular mRNA.

    Techniques: Hybridization, Expressing, Sequencing